Index A | B | C | D | E | F | G | I | J | K | M | N | O | P | S | T | V A activation_energy (kinisi.arrhenius.Arrhenius property) (kinisi.arrhenius.VogelFulcherTammann property) Analyzer (class in kinisi.analyzer) Arrhenius (class in kinisi.arrhenius) arrhenius() (in module kinisi.arrhenius) ASEParser (class in kinisi.ase) B bayesian_regression() (kinisi.diffusion.Diffusion method) C calculate_msd() (in module kinisi.displacement) calculate_mstd() (in module kinisi.displacement) compute_covariance_matrix() (kinisi.diffusion.Diffusion method) conductivity() (kinisi.conductivity_analyzer.ConductivityAnalyzer method) ConductivityAnalyzer (class in kinisi.conductivity_analyzer) coords (kinisi.parser.Parser property) correct_drift() (kinisi.parser.Parser method) covariance_matrix (kinisi.diffusion.Diffusion property) create_integer_dt() (kinisi.parser.Parser method) D D (kinisi.diffusion.Diffusion property) (kinisi.diffusion_analyzer.DiffusionAnalyzer property) D_J (kinisi.diffusion.Diffusion property) (kinisi.jump_diffusion_analyzer.JumpDiffusionAnalyzer property) da (kinisi.analyzer.Analyzer property) dg (kinisi.analyzer.Analyzer property) Diffusion (class in kinisi.diffusion) diffusion() (kinisi.diffusion_analyzer.DiffusionAnalyzer method) DiffusionAnalyzer (class in kinisi.diffusion_analyzer) disp (kinisi.parser.Parser property) distributions (kinisi.conductivity_analyzer.ConductivityAnalyzer property) (kinisi.diffusion_analyzer.DiffusionAnalyzer property) (kinisi.jump_diffusion_analyzer.JumpDiffusionAnalyzer property) dt (kinisi.analyzer.Analyzer property) E eigenvalue_clipping() (in module kinisi.diffusion) extrapolate() (kinisi.arrhenius.TemperatureDependent method) F flatchain (kinisi.conductivity_analyzer.ConductivityAnalyzer property) (kinisi.diffusion_analyzer.DiffusionAnalyzer property) (kinisi.jump_diffusion_analyzer.JumpDiffusionAnalyzer property) from_ase() (kinisi.conductivity_analyzer.ConductivityAnalyzer class method) (kinisi.diffusion_analyzer.DiffusionAnalyzer class method) (kinisi.jump_diffusion_analyzer.JumpDiffusionAnalyzer class method) from_hdf5() (kinisi.analyzer.Analyzer class method) from_universe() (kinisi.conductivity_analyzer.ConductivityAnalyzer class method) (kinisi.diffusion_analyzer.DiffusionAnalyzer class method) (kinisi.jump_diffusion_analyzer.JumpDiffusionAnalyzer class method) from_xdatcar() (kinisi.conductivity_analyzer.ConductivityAnalyzer class method) (kinisi.diffusion_analyzer.DiffusionAnalyzer class method) (kinisi.jump_diffusion_analyzer.JumpDiffusionAnalyzer class method) G get_drift_indices() (kinisi.ase.ASEParser method) (kinisi.mdanalysis.MDAnalysisParser method) (kinisi.parser.Parser method) (kinisi.pymatgen.PymatgenParser method) get_indices() (kinisi.ase.ASEParser method) (kinisi.mdanalysis.MDAnalysisParser method) (kinisi.parser.Parser method) (kinisi.pymatgen.PymatgenParser method) get_molecules() (in module kinisi.parser) get_specie_and_drift_indices() (kinisi.parser.Parser method) get_structure_coords_latt() (kinisi.ase.ASEParser method) (kinisi.mdanalysis.MDAnalysisParser method) (kinisi.pymatgen.PymatgenParser method) I intercept (kinisi.analyzer.Analyzer property) is_orthorhombic() (in module kinisi.parser) is_subset_approx() (in module kinisi.parser) J jump_diffusion() (kinisi.jump_diffusion_analyzer.JumpDiffusionAnalyzer method) JumpDiffusionAnalyzer (class in kinisi.jump_diffusion_analyzer) K kinisi.analyze module kinisi.analyzer module kinisi.arrhenius module kinisi.ase module kinisi.conductivity_analyzer module kinisi.diffusion module kinisi.diffusion_analyzer module kinisi.displacement module kinisi.jump_diffusion_analyzer module kinisi.mdanalysis module kinisi.parser module kinisi.pymatgen module kinisi.samples module M marchenkopastur() (in module kinisi.diffusion) MDAnalysisParser (class in kinisi.mdanalysis) minimum_eigenvalue_method() (in module kinisi.diffusion) module kinisi.analyze kinisi.analyzer kinisi.arrhenius kinisi.ase kinisi.conductivity_analyzer kinisi.diffusion kinisi.diffusion_analyzer kinisi.displacement kinisi.jump_diffusion_analyzer kinisi.mdanalysis kinisi.parser kinisi.pymatgen kinisi.samples mscd (kinisi.conductivity_analyzer.ConductivityAnalyzer property) msd (kinisi.diffusion_analyzer.DiffusionAnalyzer property) mstd (kinisi.jump_diffusion_analyzer.JumpDiffusionAnalyzer property) N n_atoms (kinisi.analyzer.Analyzer property) non_orthorhombic_calculate_displacements() (kinisi.parser.Parser static method) O orthorhombic_calculate_displacements() (kinisi.parser.Parser static method) P Parser (class in kinisi.parser) posterior_predictive() (kinisi.analyzer.Analyzer method) (kinisi.diffusion.Diffusion method) preexponential_factor (kinisi.arrhenius.Arrhenius property) (kinisi.arrhenius.VogelFulcherTammann property) PymatgenParser (class in kinisi.pymatgen) S Samples (class in kinisi.samples) sigma (kinisi.conductivity_analyzer.ConductivityAnalyzer property) (kinisi.diffusion.Diffusion property) T T0 (kinisi.arrhenius.VogelFulcherTammann property) TemperatureDependent (class in kinisi.arrhenius) to_hdf5() (kinisi.analyzer.Analyzer method) to_unit() (kinisi.samples.Samples method) V VogelFulcherTammann (class in kinisi.arrhenius) vtf_equation() (in module kinisi.arrhenius)
