Index A | B | C | D | E | F | G | I | J | K | L | M | N | P | S | T | V A activation_energy (kinisi.arrhenius.StandardArrhenius property) (kinisi.arrhenius.SuperArrhenius property) Analyzer (class in kinisi.analyzer) arrhenius() (in module kinisi.arrhenius) ASEParser (class in kinisi.parser) B Bootstrap (class in kinisi.diffusion) bootstrap_GLS() (kinisi.diffusion.Bootstrap method) C conductivity() (kinisi.conductivity_analyzer.ConductivityAnalyzer method) (kinisi.diffusion.Bootstrap method) ConductivityAnalyzer (class in kinisi.conductivity_analyzer) correct_drift() (kinisi.parser.Parser static method) covariance_matrix (kinisi.diffusion.Bootstrap property) D D (kinisi.diffusion.Bootstrap property) (kinisi.diffusion_analyzer.DiffusionAnalyzer property) D_J (kinisi.diffusion.Bootstrap property) (kinisi.jump_diffusion_analyzer.JumpDiffusionAnalyzer property) diffusion() (kinisi.diffusion.Bootstrap method) (kinisi.diffusion_analyzer.DiffusionAnalyzer method) DiffusionAnalyzer (class in kinisi.diffusion_analyzer) distribution (kinisi.analyzer.Analyzer property) (kinisi.arrhenius.StandardArrhenius property) (kinisi.arrhenius.SuperArrhenius property) dr (kinisi.analyzer.Analyzer property) dt (kinisi.analyzer.Analyzer property) (kinisi.diffusion.Bootstrap property) E euclidian_displacements (kinisi.diffusion.Bootstrap property) extrapolate() (kinisi.arrhenius.StandardArrhenius method) (kinisi.arrhenius.SuperArrhenius method) F flatchain (kinisi.conductivity_analyzer.ConductivityAnalyzer property) (kinisi.diffusion_analyzer.DiffusionAnalyzer property) (kinisi.jump_diffusion_analyzer.JumpDiffusionAnalyzer property) from_ase() (kinisi.conductivity_analyzer.ConductivityAnalyzer class method) (kinisi.diffusion_analyzer.DiffusionAnalyzer class method) (kinisi.jump_diffusion_analyzer.JumpDiffusionAnalyzer class method) from_dict() (kinisi.analyzer.Analyzer class method) (kinisi.conductivity_analyzer.ConductivityAnalyzer class method) (kinisi.diffusion.Bootstrap class method) (kinisi.diffusion_analyzer.DiffusionAnalyzer class method) (kinisi.jump_diffusion_analyzer.JumpDiffusionAnalyzer class method) from_file() (kinisi.conductivity_analyzer.ConductivityAnalyzer class method) (kinisi.diffusion_analyzer.DiffusionAnalyzer class method) (kinisi.jump_diffusion_analyzer.JumpDiffusionAnalyzer class method) from_pymatgen() (kinisi.conductivity_analyzer.ConductivityAnalyzer class method) (kinisi.diffusion_analyzer.DiffusionAnalyzer class method) (kinisi.jump_diffusion_analyzer.JumpDiffusionAnalyzer class method) from_universe() (kinisi.conductivity_analyzer.ConductivityAnalyzer class method) (kinisi.diffusion_analyzer.DiffusionAnalyzer class method) (kinisi.jump_diffusion_analyzer.JumpDiffusionAnalyzer class method) from_Xdatcar() (kinisi.conductivity_analyzer.ConductivityAnalyzer class method) (kinisi.diffusion_analyzer.DiffusionAnalyzer class method) (kinisi.jump_diffusion_analyzer.JumpDiffusionAnalyzer class method) G generate_covariance_matrix() (kinisi.diffusion.Bootstrap method) get_disp() (kinisi.parser.Parser static method) get_disps() (kinisi.parser.Parser method) get_indices() (kinisi.parser.ASEParser static method) (kinisi.parser.MDAnalysisParser static method) (kinisi.parser.PymatgenParser static method) get_structure_coords_latt() (kinisi.parser.ASEParser static method) (kinisi.parser.MDAnalysisParser static method) (kinisi.parser.PymatgenParser static method) get_timesteps() (kinisi.parser.Parser method) I intercept (kinisi.analyzer.Analyzer property) (kinisi.diffusion.Bootstrap property) iterator() (kinisi.diffusion.Bootstrap static method) J jump_diffusion() (kinisi.diffusion.Bootstrap method) (kinisi.jump_diffusion_analyzer.JumpDiffusionAnalyzer method) JumpDiffusionAnalyzer (class in kinisi.jump_diffusion_analyzer) K kinisi.analyze module kinisi.analyzer module kinisi.arrhenius module kinisi.conductivity_analyzer module kinisi.diffusion module kinisi.diffusion_analyzer module kinisi.jump_diffusion_analyzer module kinisi.parser module L load() (kinisi.analyzer.Analyzer class method) M MDAnalysisParser (class in kinisi.parser) module kinisi.analyze kinisi.analyzer kinisi.arrhenius kinisi.conductivity_analyzer kinisi.diffusion kinisi.diffusion_analyzer kinisi.jump_diffusion_analyzer kinisi.parser mscd (kinisi.conductivity_analyzer.ConductivityAnalyzer property) mscd_std (kinisi.conductivity_analyzer.ConductivityAnalyzer property) MSCDBootstrap (class in kinisi.diffusion) msd (kinisi.diffusion_analyzer.DiffusionAnalyzer property) msd_std (kinisi.diffusion_analyzer.DiffusionAnalyzer property) MSDBootstrap (class in kinisi.diffusion) mstd (kinisi.jump_diffusion_analyzer.JumpDiffusionAnalyzer property) mstd_std (kinisi.jump_diffusion_analyzer.JumpDiffusionAnalyzer property) MSTDBootstrap (class in kinisi.diffusion) N n (kinisi.diffusion.Bootstrap property) n_i (kinisi.diffusion.Bootstrap property) ngp (kinisi.diffusion.Bootstrap property) ngp_calculation() (kinisi.diffusion.Bootstrap static method) ngp_max (kinisi.analyzer.Analyzer property) P Parser (class in kinisi.parser) posterior_predictive() (kinisi.analyzer.Analyzer method) (kinisi.diffusion.Bootstrap method) preexponential_factor (kinisi.arrhenius.StandardArrhenius property) (kinisi.arrhenius.SuperArrhenius property) PymatgenParser (class in kinisi.parser) S s (kinisi.diffusion.Bootstrap property) sample_until_normal() (kinisi.diffusion.Bootstrap static method) save() (kinisi.analyzer.Analyzer method) sigma (kinisi.conductivity_analyzer.ConductivityAnalyzer property) (kinisi.diffusion.Bootstrap property) StandardArrhenius (class in kinisi.arrhenius) super_arrhenius() (in module kinisi.arrhenius) SuperArrhenius (class in kinisi.arrhenius) T T0 (kinisi.arrhenius.SuperArrhenius property) to_dict() (kinisi.analyzer.Analyzer method) (kinisi.conductivity_analyzer.ConductivityAnalyzer method) (kinisi.diffusion.Bootstrap method) (kinisi.diffusion_analyzer.DiffusionAnalyzer method) (kinisi.jump_diffusion_analyzer.JumpDiffusionAnalyzer method) V v (kinisi.diffusion.Bootstrap property) volume (kinisi.analyzer.Analyzer property) (kinisi.parser.Parser property)